Package: gwid 0.3.0

Soroush Mahmoudiandehkordi

gwid: Genome-Wide Identity-by-Descent

Methods and tools for the analysis of Genome Wide Identity-by-Descent ('gwid') mapping data, focusing on testing whether there is a higher occurrence of Identity-By-Descent (IBD) segments around potential causal variants in cases compared to controls, which is crucial for identifying rare variants. To enhance its analytical power, 'gwid' incorporates a Sliding Window Approach, allowing for the detection and analysis of signals from multiple Single Nucleotide Polymorphisms (SNPs).

Authors:Soroush Mahmoudiandehkordi [aut, cre], Steven J Schrodi [aut], Mehdi Maadooliat [aut]

gwid_0.3.0.tar.gz
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gwid_0.3.0.tgz(r-4.4-any)gwid_0.3.0.tgz(r-4.3-any)
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gwid.pdf |gwid.html✨
gwid/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/soroushmdg/gwid/issues

On CRAN:

17 exports 1 stars 1.97 score 86 dependencies 4 scripts 304 downloads

Last updated 9 days agofrom:e419647170. Checks:OK: 7. Indexed: yes.

Exports:build_gwasbuild_gwidbuild_phasecase_controlextractextract_windowfisher_testgtesthaplotype_frequencyhaplotype_structurelaunch_appmcnemar_testmcnemar_test_permutpermutation_testprintrohsubset

Dependencies:askpassbase64encbslibcachemclicolorspacecommonmarkcpp11crayoncrosstalkcurldata.tabledigestdplyrevaluatefansifarverfastmapfontawesomefsgdsfmtgenericsggplot2ghgitcredsgluegtablehighrhtmltoolshtmlwidgetshttpuvhttrhttr2iniisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelubridatemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpiggybackpillarpkgconfigplotlypromisespurrrR6rappdirsRColorBrewerRcppRcppRollrlangrmarkdownsassscalesshinySNPRelatesourcetoolsstringistringrsystibbletidyrtidyselecttimechangetinytexutf8vctrsviridisLitewithrxfunxtableyaml